• Canvas: Assignments & Grading Overview (Webinar)
    February 10 10:00am
    This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress.   more »
  • Sexual Responsibility Week
    February 10 11:00am
    Sexual Responsibility Week is a week-long event dedicated to sexual health education and awareness. The IUPUI Health and Wellness Peer Educators will be in the Campus Center and the Multicultural center during the week of February 8th- 11th.  Be on the lookout for a giant, felt vagina; a life-size “genderbread person;” condom lo more »
  • HTML5 & CSS: Structuring Pages
    February 10 1:30pm
    This workshop lasts 3.5 hours, and is part of the certificate series Web Creation Expand your HTML5 & CSS: The Basics knowledge by learning how to fully structure your pages. Learn how to create CSS buttons, internal-page hyperlinks, tables, useful navigation, useful footers, and properly formatti more »
  • Excel 2013: Data Management
    February 10 5:30pm
    This workshop lasts 3 hours, and is part of the certificate series Excel 2013 End-User Learn how to use lists to extract and manipulate data. Participants will explore Excel’s table-related features in this workshop, as well as creating custom lists, validating data entry, sorting and filtering more »
  • IU School of Social Work Board Meeting
    February 10 5:30pm
    For more information contact Karen Jones at kdeery@iupui.edu. more »
Wednesday, February 10, 2016
    IU Calendar




    • Canvas: Assignments & Grading Overview (Webinar)
      February 10 10:00am
      This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress.   more »
    • Sexual Responsibility Week
      February 10 11:00am
      Sexual Responsibility Week is a week-long event dedicated to sexual health education and awareness. The IUPUI Health and Wellness Peer Educators will be in the Campus Center and the Multicultural center during the week of February 8th- 11th.  Be on the lookout for a giant, felt vagina; a life-size “genderbread person;” condom lo more »
    • HTML5 & CSS: Structuring Pages
      February 10 1:30pm
      This workshop lasts 3.5 hours, and is part of the certificate series Web Creation Expand your HTML5 & CSS: The Basics knowledge by learning how to fully structure your pages. Learn how to create CSS buttons, internal-page hyperlinks, tables, useful navigation, useful footers, and properly formatti more »
    • Excel 2013: Data Management
      February 10 5:30pm
      This workshop lasts 3 hours, and is part of the certificate series Excel 2013 End-User Learn how to use lists to extract and manipulate data. Participants will explore Excel’s table-related features in this workshop, as well as creating custom lists, validating data entry, sorting and filtering more »
    • IU School of Social Work Board Meeting
      February 10 5:30pm
      For more information contact Karen Jones at kdeery@iupui.edu. more »
    Wednesday, February 10, 2016
      IU Calendar




      • Canvas: Assignments & Grading Overview (Webinar)
        February 10 10:00am
        This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress.   more »
      • Sexual Responsibility Week
        February 10 11:00am
        Sexual Responsibility Week is a week-long event dedicated to sexual health education and awareness. The IUPUI Health and Wellness Peer Educators will be in the Campus Center and the Multicultural center during the week of February 8th- 11th.  Be on the lookout for a giant, felt vagina; a life-size “genderbread person;” condom lo more »
      • HTML5 & CSS: Structuring Pages
        February 10 1:30pm
        This workshop lasts 3.5 hours, and is part of the certificate series Web Creation Expand your HTML5 & CSS: The Basics knowledge by learning how to fully structure your pages. Learn how to create CSS buttons, internal-page hyperlinks, tables, useful navigation, useful footers, and properly formatti more »
      • Excel 2013: Data Management
        February 10 5:30pm
        This workshop lasts 3 hours, and is part of the certificate series Excel 2013 End-User Learn how to use lists to extract and manipulate data. Participants will explore Excel’s table-related features in this workshop, as well as creating custom lists, validating data entry, sorting and filtering more »
      • IU School of Social Work Board Meeting
        February 10 5:30pm
        For more information contact Karen Jones at kdeery@iupui.edu. more »
      Wednesday, February 10, 2016
        IU Calendar




        • Canvas: Assignments & Grading Overview (Webinar)
          February 10 10:00am
          This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress.   more »
        • Sexual Responsibility Week
          February 10 11:00am
          Sexual Responsibility Week is a week-long event dedicated to sexual health education and awareness. The IUPUI Health and Wellness Peer Educators will be in the Campus Center and the Multicultural center during the week of February 8th- 11th.  Be on the lookout for a giant, felt vagina; a life-size “genderbread person;” condom lo more »
        • HTML5 & CSS: Structuring Pages
          February 10 1:30pm
          This workshop lasts 3.5 hours, and is part of the certificate series Web Creation Expand your HTML5 & CSS: The Basics knowledge by learning how to fully structure your pages. Learn how to create CSS buttons, internal-page hyperlinks, tables, useful navigation, useful footers, and properly formatti more »
        • Excel 2013: Data Management
          February 10 5:30pm
          This workshop lasts 3 hours, and is part of the certificate series Excel 2013 End-User Learn how to use lists to extract and manipulate data. Participants will explore Excel’s table-related features in this workshop, as well as creating custom lists, validating data entry, sorting and filtering more »
        • IU School of Social Work Board Meeting
          February 10 5:30pm
          For more information contact Karen Jones at kdeery@iupui.edu. more »
        Wednesday, February 10, 2016

          About This Event

          Summary

          Yogesh Pandit, Master’s in Bioinformatics Thesis Defense

          Title: Context Specific Text Mining For Annotating Protein Interactions With Experimental Evidence

          Thesis committee:

          • Mathew Palakal, Ph.D., Chair

          • Yunlong Liu, Ph.D.

          • Xiaowen Liu, Ph.D.

          Abstract:

          Proteins are the building blocks in a biological system. They interact with other proteins to make unique biological phenomenon. Protein-protein interactions play a valuable role in understanding the molecular mechanisms occurring in any biological system. Protein interaction databases are a rich source on protein interaction related information. They gather large amounts of information from published literature to enrich their data. Expert curators put in most of these efforts manually. The amount of accessible and publicly available literature is growing very rapidly. Manual annotation is a time consuming process. And with the rate at which available information is growing, it cannot be dealt with only manual curation. There need to be tools to process this huge amounts of data to bring out valuable gist than can help curators proceed faster. In case of extracting protein-protein interaction evidences from literature, just a mere mention of a certain protein by look-up approaches cannot help validate the interaction. Supporting protein interaction information with experimental evidence can help this cause. Also to avoid redundancy in curation efforts and for ease of accessibility, efforts are being put to relate manually curated information to standardized ontologies. In this study, we are applying machine learning based classification techniques to classify any given protein interaction related document into an interaction detection method. We use biological attributes and experimental factors, different combination of which define any particular interaction detection method. Then using predicted detection methods, proteins identified using named entity recognition techniques and decomposing the parts-of-speech composition we search for sentences with experimental evidence for a protein-protein interaction. We report an accuracy of 75.1% with a F-score of 47.6% on a dataset containing 2035 training documents and 300 test documents.

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          Contact Information

          Mary O'Neill
          moneill@iupui.edu

          Event Site --- None ---
          Registration --- None ---

          Event Schedule

          There are no upcoming dates for this event.

          IU Calendar




          • Canvas: Assignments & Grading Overview (Webinar)
            February 10 10:00am
            This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress.   more »
          • Sexual Responsibility Week
            February 10 11:00am
            Sexual Responsibility Week is a week-long event dedicated to sexual health education and awareness. The IUPUI Health and Wellness Peer Educators will be in the Campus Center and the Multicultural center during the week of February 8th- 11th.  Be on the lookout for a giant, felt vagina; a life-size “genderbread person;” condom lo more »
          • HTML5 & CSS: Structuring Pages
            February 10 1:30pm
            This workshop lasts 3.5 hours, and is part of the certificate series Web Creation Expand your HTML5 & CSS: The Basics knowledge by learning how to fully structure your pages. Learn how to create CSS buttons, internal-page hyperlinks, tables, useful navigation, useful footers, and properly formatti more »
          • Excel 2013: Data Management
            February 10 5:30pm
            This workshop lasts 3 hours, and is part of the certificate series Excel 2013 End-User Learn how to use lists to extract and manipulate data. Participants will explore Excel’s table-related features in this workshop, as well as creating custom lists, validating data entry, sorting and filtering more »
          • IU School of Social Work Board Meeting
            February 10 5:30pm
            For more information contact Karen Jones at kdeery@iupui.edu. more »
          Wednesday, February 10, 2016