• Excel 2013: Data Management
    June 01 1:30pm
    This session is being delivered in room IT 121 at IUPUI, and simultaneously being offered online. This is the face-to-face session, so please register for this session only if you plan to attend in person. This workshop lasts 3 hours, more »
  • Excel 2013: Data Management
    June 01 1:30pm
    This session is being delivered online and simultaneously in IT 121 at IUPUI. This is the online session, so please register for this session only if you plan to attend remotely. This workshop lasts 3 hours, and is part of the certifi more »
  • Page Design & Layout Basics
    June 01 5:30pm
    This workshop lasts 3 hours, and is part of the certificate series Desktop Publishing Fundamentals This workshop introduces basic page design theory. It is not a “hands-on” experience, except during a group project. The workshop is designed to provide basic instruction on how to plan a pub more »
  • Canvas: Assignments & Grading Overview
    June 02 11:00am
    This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress   more »
  • Outlook 2013: Managing Your Email
    June 02 1:30pm
    This workshop lasts 2 hours, and is part of the certificate series Office 2013 Productivity Is your Outlook Exchange account a mess? Are you having trouble finding the messages that you need? Are you spending way too much time sorting through files and folders? Have you almost reached your Outlook Exc more »
Monday, May 30, 2016
    IU Calendar




    • Excel 2013: Data Management
      June 01 1:30pm
      This session is being delivered in room IT 121 at IUPUI, and simultaneously being offered online. This is the face-to-face session, so please register for this session only if you plan to attend in person. This workshop lasts 3 hours, more »
    • Excel 2013: Data Management
      June 01 1:30pm
      This session is being delivered online and simultaneously in IT 121 at IUPUI. This is the online session, so please register for this session only if you plan to attend remotely. This workshop lasts 3 hours, and is part of the certifi more »
    • Page Design & Layout Basics
      June 01 5:30pm
      This workshop lasts 3 hours, and is part of the certificate series Desktop Publishing Fundamentals This workshop introduces basic page design theory. It is not a “hands-on” experience, except during a group project. The workshop is designed to provide basic instruction on how to plan a pub more »
    • Canvas: Assignments & Grading Overview
      June 02 11:00am
      This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress   more »
    • Outlook 2013: Managing Your Email
      June 02 1:30pm
      This workshop lasts 2 hours, and is part of the certificate series Office 2013 Productivity Is your Outlook Exchange account a mess? Are you having trouble finding the messages that you need? Are you spending way too much time sorting through files and folders? Have you almost reached your Outlook Exc more »
    Monday, May 30, 2016
      IU Calendar




      • Excel 2013: Data Management
        June 01 1:30pm
        This session is being delivered in room IT 121 at IUPUI, and simultaneously being offered online. This is the face-to-face session, so please register for this session only if you plan to attend in person. This workshop lasts 3 hours, more »
      • Excel 2013: Data Management
        June 01 1:30pm
        This session is being delivered online and simultaneously in IT 121 at IUPUI. This is the online session, so please register for this session only if you plan to attend remotely. This workshop lasts 3 hours, and is part of the certifi more »
      • Page Design & Layout Basics
        June 01 5:30pm
        This workshop lasts 3 hours, and is part of the certificate series Desktop Publishing Fundamentals This workshop introduces basic page design theory. It is not a “hands-on” experience, except during a group project. The workshop is designed to provide basic instruction on how to plan a pub more »
      • Canvas: Assignments & Grading Overview
        June 02 11:00am
        This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress   more »
      • Outlook 2013: Managing Your Email
        June 02 1:30pm
        This workshop lasts 2 hours, and is part of the certificate series Office 2013 Productivity Is your Outlook Exchange account a mess? Are you having trouble finding the messages that you need? Are you spending way too much time sorting through files and folders? Have you almost reached your Outlook Exc more »
      Monday, May 30, 2016
        IU Calendar




        • Excel 2013: Data Management
          June 01 1:30pm
          This session is being delivered in room IT 121 at IUPUI, and simultaneously being offered online. This is the face-to-face session, so please register for this session only if you plan to attend in person. This workshop lasts 3 hours, more »
        • Excel 2013: Data Management
          June 01 1:30pm
          This session is being delivered online and simultaneously in IT 121 at IUPUI. This is the online session, so please register for this session only if you plan to attend remotely. This workshop lasts 3 hours, and is part of the certifi more »
        • Page Design & Layout Basics
          June 01 5:30pm
          This workshop lasts 3 hours, and is part of the certificate series Desktop Publishing Fundamentals This workshop introduces basic page design theory. It is not a “hands-on” experience, except during a group project. The workshop is designed to provide basic instruction on how to plan a pub more »
        • Canvas: Assignments & Grading Overview
          June 02 11:00am
          This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress   more »
        • Outlook 2013: Managing Your Email
          June 02 1:30pm
          This workshop lasts 2 hours, and is part of the certificate series Office 2013 Productivity Is your Outlook Exchange account a mess? Are you having trouble finding the messages that you need? Are you spending way too much time sorting through files and folders? Have you almost reached your Outlook Exc more »
        Monday, May 30, 2016

          About This Event

          Summary

          Yogesh Pandit, Master’s in Bioinformatics Thesis Defense

          Title: Context Specific Text Mining For Annotating Protein Interactions With Experimental Evidence

          Thesis committee:

          • Mathew Palakal, Ph.D., Chair

          • Yunlong Liu, Ph.D.

          • Xiaowen Liu, Ph.D.

          Abstract:

          Proteins are the building blocks in a biological system. They interact with other proteins to make unique biological phenomenon. Protein-protein interactions play a valuable role in understanding the molecular mechanisms occurring in any biological system. Protein interaction databases are a rich source on protein interaction related information. They gather large amounts of information from published literature to enrich their data. Expert curators put in most of these efforts manually. The amount of accessible and publicly available literature is growing very rapidly. Manual annotation is a time consuming process. And with the rate at which available information is growing, it cannot be dealt with only manual curation. There need to be tools to process this huge amounts of data to bring out valuable gist than can help curators proceed faster. In case of extracting protein-protein interaction evidences from literature, just a mere mention of a certain protein by look-up approaches cannot help validate the interaction. Supporting protein interaction information with experimental evidence can help this cause. Also to avoid redundancy in curation efforts and for ease of accessibility, efforts are being put to relate manually curated information to standardized ontologies. In this study, we are applying machine learning based classification techniques to classify any given protein interaction related document into an interaction detection method. We use biological attributes and experimental factors, different combination of which define any particular interaction detection method. Then using predicted detection methods, proteins identified using named entity recognition techniques and decomposing the parts-of-speech composition we search for sentences with experimental evidence for a protein-protein interaction. We report an accuracy of 75.1% with a F-score of 47.6% on a dataset containing 2035 training documents and 300 test documents.

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          Contact Information

          Mary O'Neill
          moneill@iupui.edu

          Event Site --- None ---
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          Event Schedule

          There are no upcoming dates for this event.

          IU Calendar




          • Excel 2013: Data Management
            June 01 1:30pm
            This session is being delivered in room IT 121 at IUPUI, and simultaneously being offered online. This is the face-to-face session, so please register for this session only if you plan to attend in person. This workshop lasts 3 hours, more »
          • Excel 2013: Data Management
            June 01 1:30pm
            This session is being delivered online and simultaneously in IT 121 at IUPUI. This is the online session, so please register for this session only if you plan to attend remotely. This workshop lasts 3 hours, and is part of the certifi more »
          • Page Design & Layout Basics
            June 01 5:30pm
            This workshop lasts 3 hours, and is part of the certificate series Desktop Publishing Fundamentals This workshop introduces basic page design theory. It is not a “hands-on” experience, except during a group project. The workshop is designed to provide basic instruction on how to plan a pub more »
          • Canvas: Assignments & Grading Overview
            June 02 11:00am
            This workshop lasts 60 minutes. In this webinar, jointly offered by CITL and IT Training, we will demonstrate how the Assignments and Grades tools in Canvas present graded activities to students, and how instructors record grades and keep students informed about their progress   more »
          • Outlook 2013: Managing Your Email
            June 02 1:30pm
            This workshop lasts 2 hours, and is part of the certificate series Office 2013 Productivity Is your Outlook Exchange account a mess? Are you having trouble finding the messages that you need? Are you spending way too much time sorting through files and folders? Have you almost reached your Outlook Exc more »
          Monday, May 30, 2016