• Get Ahead and Stay Ahead: Breaking through with Problem People at Work
    May 06 12:00am
    This workshop lasts 4 weeks. If you do not have an IU account, just create an IU guest account that you can use to register. The IU Alumni Association has teamed up with Nora Simpson of Get Ahead and Stay Ahead to bring you this special four-week online course, designed to h more »
  • IU Robert H. McKinney AA and Board of Visitors Joint Meeting and Evening of Celebration
    May 06 12:00am
    For more information please contact Theresa Bell at thebell@iupui.edu. more »
  • IU Robert H. McKinney School of Law Evening of Celebration
    May 06 6:00pm
    Evening of Celebration   Dean Andrew R. Klein and the IU Robert H. McKinney Alumni Association Invite you to join us as we   Celebrate the graduating Class of 2016 and Recognize Distinguished Alumni   Friday, May 6, 2016 6 pm to 9 pm Brief program at 7pm   Indianapol more »
  • CompTIA Security+
    May 09 9:00am
    This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
  • CompTIA Security+
    May 09 9:00am
    This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
Friday, May 6, 2016
    IU Calendar




    • Get Ahead and Stay Ahead: Breaking through with Problem People at Work
      May 06 12:00am
      This workshop lasts 4 weeks. If you do not have an IU account, just create an IU guest account that you can use to register. The IU Alumni Association has teamed up with Nora Simpson of Get Ahead and Stay Ahead to bring you this special four-week online course, designed to h more »
    • IU Robert H. McKinney AA and Board of Visitors Joint Meeting and Evening of Celebration
      May 06 12:00am
      For more information please contact Theresa Bell at thebell@iupui.edu. more »
    • IU Robert H. McKinney School of Law Evening of Celebration
      May 06 6:00pm
      Evening of Celebration   Dean Andrew R. Klein and the IU Robert H. McKinney Alumni Association Invite you to join us as we   Celebrate the graduating Class of 2016 and Recognize Distinguished Alumni   Friday, May 6, 2016 6 pm to 9 pm Brief program at 7pm   Indianapol more »
    • CompTIA Security+
      May 09 9:00am
      This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
    • CompTIA Security+
      May 09 9:00am
      This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
    Friday, May 6, 2016
      IU Calendar




      • Get Ahead and Stay Ahead: Breaking through with Problem People at Work
        May 06 12:00am
        This workshop lasts 4 weeks. If you do not have an IU account, just create an IU guest account that you can use to register. The IU Alumni Association has teamed up with Nora Simpson of Get Ahead and Stay Ahead to bring you this special four-week online course, designed to h more »
      • IU Robert H. McKinney AA and Board of Visitors Joint Meeting and Evening of Celebration
        May 06 12:00am
        For more information please contact Theresa Bell at thebell@iupui.edu. more »
      • IU Robert H. McKinney School of Law Evening of Celebration
        May 06 6:00pm
        Evening of Celebration   Dean Andrew R. Klein and the IU Robert H. McKinney Alumni Association Invite you to join us as we   Celebrate the graduating Class of 2016 and Recognize Distinguished Alumni   Friday, May 6, 2016 6 pm to 9 pm Brief program at 7pm   Indianapol more »
      • CompTIA Security+
        May 09 9:00am
        This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
      • CompTIA Security+
        May 09 9:00am
        This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
      Friday, May 6, 2016
        IU Calendar




        • Get Ahead and Stay Ahead: Breaking through with Problem People at Work
          May 06 12:00am
          This workshop lasts 4 weeks. If you do not have an IU account, just create an IU guest account that you can use to register. The IU Alumni Association has teamed up with Nora Simpson of Get Ahead and Stay Ahead to bring you this special four-week online course, designed to h more »
        • IU Robert H. McKinney AA and Board of Visitors Joint Meeting and Evening of Celebration
          May 06 12:00am
          For more information please contact Theresa Bell at thebell@iupui.edu. more »
        • IU Robert H. McKinney School of Law Evening of Celebration
          May 06 6:00pm
          Evening of Celebration   Dean Andrew R. Klein and the IU Robert H. McKinney Alumni Association Invite you to join us as we   Celebrate the graduating Class of 2016 and Recognize Distinguished Alumni   Friday, May 6, 2016 6 pm to 9 pm Brief program at 7pm   Indianapol more »
        • CompTIA Security+
          May 09 9:00am
          This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
        • CompTIA Security+
          May 09 9:00am
          This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
        Friday, May 6, 2016

          About This Event

          Summary

          Yogesh Pandit, Master’s in Bioinformatics Thesis Defense

          Title: Context Specific Text Mining For Annotating Protein Interactions With Experimental Evidence

          Thesis committee:

          • Mathew Palakal, Ph.D., Chair

          • Yunlong Liu, Ph.D.

          • Xiaowen Liu, Ph.D.

          Abstract:

          Proteins are the building blocks in a biological system. They interact with other proteins to make unique biological phenomenon. Protein-protein interactions play a valuable role in understanding the molecular mechanisms occurring in any biological system. Protein interaction databases are a rich source on protein interaction related information. They gather large amounts of information from published literature to enrich their data. Expert curators put in most of these efforts manually. The amount of accessible and publicly available literature is growing very rapidly. Manual annotation is a time consuming process. And with the rate at which available information is growing, it cannot be dealt with only manual curation. There need to be tools to process this huge amounts of data to bring out valuable gist than can help curators proceed faster. In case of extracting protein-protein interaction evidences from literature, just a mere mention of a certain protein by look-up approaches cannot help validate the interaction. Supporting protein interaction information with experimental evidence can help this cause. Also to avoid redundancy in curation efforts and for ease of accessibility, efforts are being put to relate manually curated information to standardized ontologies. In this study, we are applying machine learning based classification techniques to classify any given protein interaction related document into an interaction detection method. We use biological attributes and experimental factors, different combination of which define any particular interaction detection method. Then using predicted detection methods, proteins identified using named entity recognition techniques and decomposing the parts-of-speech composition we search for sentences with experimental evidence for a protein-protein interaction. We report an accuracy of 75.1% with a F-score of 47.6% on a dataset containing 2035 training documents and 300 test documents.

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          Contact Information

          Mary O'Neill
          moneill@iupui.edu

          Event Site --- None ---
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          Event Schedule

          There are no upcoming dates for this event.

          IU Calendar




          • Get Ahead and Stay Ahead: Breaking through with Problem People at Work
            May 06 12:00am
            This workshop lasts 4 weeks. If you do not have an IU account, just create an IU guest account that you can use to register. The IU Alumni Association has teamed up with Nora Simpson of Get Ahead and Stay Ahead to bring you this special four-week online course, designed to h more »
          • IU Robert H. McKinney AA and Board of Visitors Joint Meeting and Evening of Celebration
            May 06 12:00am
            For more information please contact Theresa Bell at thebell@iupui.edu. more »
          • IU Robert H. McKinney School of Law Evening of Celebration
            May 06 6:00pm
            Evening of Celebration   Dean Andrew R. Klein and the IU Robert H. McKinney Alumni Association Invite you to join us as we   Celebrate the graduating Class of 2016 and Recognize Distinguished Alumni   Friday, May 6, 2016 6 pm to 9 pm Brief program at 7pm   Indianapol more »
          • CompTIA Security+
            May 09 9:00am
            This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
          • CompTIA Security+
            May 09 9:00am
            This workshop lasts 5 days. CompTIA Security+ is an international, vendor-neutral certification that demonstrates competency in: Network Security Compliance and operational security Threats and vulnerabilities Application, data and host security more »
          Friday, May 6, 2016