• Excel 2013: The Basics
    July 06 1:30pm
    This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity  Excel 2013 End-User Excel is the most-used spreadsheet and analysis application today. This workshop introduces basic Excel features such as entering various types of data, working with c more »
  • Access 2013: The Basics
    July 07 9:00am
    This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity Access 2013 End-User Access databases are ideal tools for tracking large volumes of related information and is the most commonly used desktop database application in use today. Intended for peo more »
  • Creating Graphics for the Web
    July 08 9:00am
    This workshop lasts 3 hours, and is part of the certificate series Web Creation This workshop introduces the different tools available in Illustrator and Photoshop for creating web graphics. Participants will create graphics for a website, including buttons, a logo, and a banner image. During the crea more »
  • IU Orthodontic Graduation Dinner
    July 08 6:00pm
    For more information or to register for this event please contact Karen Jones at kdeery@iupui.edu or 317-274-8959. more »
  • Supporting Windows 8.1 (MOC 20688)
    July 11 9:00am
    This workshop lasts 5 days. Gain the knowledge and skills you need to support the Windows 8.1 operating system and solve technical troubleshooting problems in a Windows 8.1 and Windows Server 2012 R2 networking environment. This course is designed for IT professionals who have experience with Windows devic more »
Saturday, July 2, 2016
    IU Calendar




    • Excel 2013: The Basics
      July 06 1:30pm
      This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity  Excel 2013 End-User Excel is the most-used spreadsheet and analysis application today. This workshop introduces basic Excel features such as entering various types of data, working with c more »
    • Access 2013: The Basics
      July 07 9:00am
      This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity Access 2013 End-User Access databases are ideal tools for tracking large volumes of related information and is the most commonly used desktop database application in use today. Intended for peo more »
    • Creating Graphics for the Web
      July 08 9:00am
      This workshop lasts 3 hours, and is part of the certificate series Web Creation This workshop introduces the different tools available in Illustrator and Photoshop for creating web graphics. Participants will create graphics for a website, including buttons, a logo, and a banner image. During the crea more »
    • IU Orthodontic Graduation Dinner
      July 08 6:00pm
      For more information or to register for this event please contact Karen Jones at kdeery@iupui.edu or 317-274-8959. more »
    • Supporting Windows 8.1 (MOC 20688)
      July 11 9:00am
      This workshop lasts 5 days. Gain the knowledge and skills you need to support the Windows 8.1 operating system and solve technical troubleshooting problems in a Windows 8.1 and Windows Server 2012 R2 networking environment. This course is designed for IT professionals who have experience with Windows devic more »
    Saturday, July 2, 2016
      IU Calendar




      • Excel 2013: The Basics
        July 06 1:30pm
        This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity  Excel 2013 End-User Excel is the most-used spreadsheet and analysis application today. This workshop introduces basic Excel features such as entering various types of data, working with c more »
      • Access 2013: The Basics
        July 07 9:00am
        This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity Access 2013 End-User Access databases are ideal tools for tracking large volumes of related information and is the most commonly used desktop database application in use today. Intended for peo more »
      • Creating Graphics for the Web
        July 08 9:00am
        This workshop lasts 3 hours, and is part of the certificate series Web Creation This workshop introduces the different tools available in Illustrator and Photoshop for creating web graphics. Participants will create graphics for a website, including buttons, a logo, and a banner image. During the crea more »
      • IU Orthodontic Graduation Dinner
        July 08 6:00pm
        For more information or to register for this event please contact Karen Jones at kdeery@iupui.edu or 317-274-8959. more »
      • Supporting Windows 8.1 (MOC 20688)
        July 11 9:00am
        This workshop lasts 5 days. Gain the knowledge and skills you need to support the Windows 8.1 operating system and solve technical troubleshooting problems in a Windows 8.1 and Windows Server 2012 R2 networking environment. This course is designed for IT professionals who have experience with Windows devic more »
      Saturday, July 2, 2016
        IU Calendar




        • Excel 2013: The Basics
          July 06 1:30pm
          This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity  Excel 2013 End-User Excel is the most-used spreadsheet and analysis application today. This workshop introduces basic Excel features such as entering various types of data, working with c more »
        • Access 2013: The Basics
          July 07 9:00am
          This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity Access 2013 End-User Access databases are ideal tools for tracking large volumes of related information and is the most commonly used desktop database application in use today. Intended for peo more »
        • Creating Graphics for the Web
          July 08 9:00am
          This workshop lasts 3 hours, and is part of the certificate series Web Creation This workshop introduces the different tools available in Illustrator and Photoshop for creating web graphics. Participants will create graphics for a website, including buttons, a logo, and a banner image. During the crea more »
        • IU Orthodontic Graduation Dinner
          July 08 6:00pm
          For more information or to register for this event please contact Karen Jones at kdeery@iupui.edu or 317-274-8959. more »
        • Supporting Windows 8.1 (MOC 20688)
          July 11 9:00am
          This workshop lasts 5 days. Gain the knowledge and skills you need to support the Windows 8.1 operating system and solve technical troubleshooting problems in a Windows 8.1 and Windows Server 2012 R2 networking environment. This course is designed for IT professionals who have experience with Windows devic more »
        Saturday, July 2, 2016

          About This Event

          Summary

          Yogesh Pandit, Master’s in Bioinformatics Thesis Defense

          Title: Context Specific Text Mining For Annotating Protein Interactions With Experimental Evidence

          Thesis committee:

          • Mathew Palakal, Ph.D., Chair

          • Yunlong Liu, Ph.D.

          • Xiaowen Liu, Ph.D.

          Abstract:

          Proteins are the building blocks in a biological system. They interact with other proteins to make unique biological phenomenon. Protein-protein interactions play a valuable role in understanding the molecular mechanisms occurring in any biological system. Protein interaction databases are a rich source on protein interaction related information. They gather large amounts of information from published literature to enrich their data. Expert curators put in most of these efforts manually. The amount of accessible and publicly available literature is growing very rapidly. Manual annotation is a time consuming process. And with the rate at which available information is growing, it cannot be dealt with only manual curation. There need to be tools to process this huge amounts of data to bring out valuable gist than can help curators proceed faster. In case of extracting protein-protein interaction evidences from literature, just a mere mention of a certain protein by look-up approaches cannot help validate the interaction. Supporting protein interaction information with experimental evidence can help this cause. Also to avoid redundancy in curation efforts and for ease of accessibility, efforts are being put to relate manually curated information to standardized ontologies. In this study, we are applying machine learning based classification techniques to classify any given protein interaction related document into an interaction detection method. We use biological attributes and experimental factors, different combination of which define any particular interaction detection method. Then using predicted detection methods, proteins identified using named entity recognition techniques and decomposing the parts-of-speech composition we search for sentences with experimental evidence for a protein-protein interaction. We report an accuracy of 75.1% with a F-score of 47.6% on a dataset containing 2035 training documents and 300 test documents.

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          Contact Information

          Mary O'Neill
          moneill@iupui.edu

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          Event Schedule

          There are no upcoming dates for this event.

          IU Calendar




          • Excel 2013: The Basics
            July 06 1:30pm
            This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity  Excel 2013 End-User Excel is the most-used spreadsheet and analysis application today. This workshop introduces basic Excel features such as entering various types of data, working with c more »
          • Access 2013: The Basics
            July 07 9:00am
            This workshop lasts 3 hours, and is part of the following certificates series: Office 2013 Productivity Access 2013 End-User Access databases are ideal tools for tracking large volumes of related information and is the most commonly used desktop database application in use today. Intended for peo more »
          • Creating Graphics for the Web
            July 08 9:00am
            This workshop lasts 3 hours, and is part of the certificate series Web Creation This workshop introduces the different tools available in Illustrator and Photoshop for creating web graphics. Participants will create graphics for a website, including buttons, a logo, and a banner image. During the crea more »
          • IU Orthodontic Graduation Dinner
            July 08 6:00pm
            For more information or to register for this event please contact Karen Jones at kdeery@iupui.edu or 317-274-8959. more »
          • Supporting Windows 8.1 (MOC 20688)
            July 11 9:00am
            This workshop lasts 5 days. Gain the knowledge and skills you need to support the Windows 8.1 operating system and solve technical troubleshooting problems in a Windows 8.1 and Windows Server 2012 R2 networking environment. This course is designed for IT professionals who have experience with Windows devic more »
          Saturday, July 2, 2016