• CompTIA CASP
    July 27 9:00am
    This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
  • CompTIA CASP
    July 27 9:00am
    This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
  • Excel 2013: Basic Automation Using Macros
    July 27 1:30pm
    This workshop lasts 90 minutes, and is part of the certificate series Excel 2013 End-User Macros enable Excel users to automate their work by recording a sequence of commands into a single action. In this workshop, participants will explore how to record and edit macros in Excel, how to make them easi more »
  • Access 2013: Forms
    July 28 9:00am
    This workshop lasts 3.5 hours, and is part of the certificate series Access 2013 End-User Relational forms tie together data from various tables into a single object, facilitating data entry and editing. This workshop is intended for anyone who is interested in learning how to create and enhance vario more »
  • The Office of Equal Opportunity Legal Compliance Training
    July 28 10:00am
    Course Overview:  The Office of Equal Opportunity Legal Compliance Course will provide necessary information to supervisors and HR Professionals in relation to Affirmative Action, Equal Employment Opportunity and the American's with Disabilities Act.  Learning Objectives: - Understand the latest Equal Employment Opportun more »
Wednesday, July 27, 2016
    IU Calendar




    • CompTIA CASP
      July 27 9:00am
      This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
    • CompTIA CASP
      July 27 9:00am
      This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
    • Excel 2013: Basic Automation Using Macros
      July 27 1:30pm
      This workshop lasts 90 minutes, and is part of the certificate series Excel 2013 End-User Macros enable Excel users to automate their work by recording a sequence of commands into a single action. In this workshop, participants will explore how to record and edit macros in Excel, how to make them easi more »
    • Access 2013: Forms
      July 28 9:00am
      This workshop lasts 3.5 hours, and is part of the certificate series Access 2013 End-User Relational forms tie together data from various tables into a single object, facilitating data entry and editing. This workshop is intended for anyone who is interested in learning how to create and enhance vario more »
    • The Office of Equal Opportunity Legal Compliance Training
      July 28 10:00am
      Course Overview:  The Office of Equal Opportunity Legal Compliance Course will provide necessary information to supervisors and HR Professionals in relation to Affirmative Action, Equal Employment Opportunity and the American's with Disabilities Act.  Learning Objectives: - Understand the latest Equal Employment Opportun more »
    Wednesday, July 27, 2016
      IU Calendar




      • CompTIA CASP
        July 27 9:00am
        This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
      • CompTIA CASP
        July 27 9:00am
        This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
      • Excel 2013: Basic Automation Using Macros
        July 27 1:30pm
        This workshop lasts 90 minutes, and is part of the certificate series Excel 2013 End-User Macros enable Excel users to automate their work by recording a sequence of commands into a single action. In this workshop, participants will explore how to record and edit macros in Excel, how to make them easi more »
      • Access 2013: Forms
        July 28 9:00am
        This workshop lasts 3.5 hours, and is part of the certificate series Access 2013 End-User Relational forms tie together data from various tables into a single object, facilitating data entry and editing. This workshop is intended for anyone who is interested in learning how to create and enhance vario more »
      • The Office of Equal Opportunity Legal Compliance Training
        July 28 10:00am
        Course Overview:  The Office of Equal Opportunity Legal Compliance Course will provide necessary information to supervisors and HR Professionals in relation to Affirmative Action, Equal Employment Opportunity and the American's with Disabilities Act.  Learning Objectives: - Understand the latest Equal Employment Opportun more »
      Wednesday, July 27, 2016
        IU Calendar




        • CompTIA CASP
          July 27 9:00am
          This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
        • CompTIA CASP
          July 27 9:00am
          This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
        • Excel 2013: Basic Automation Using Macros
          July 27 1:30pm
          This workshop lasts 90 minutes, and is part of the certificate series Excel 2013 End-User Macros enable Excel users to automate their work by recording a sequence of commands into a single action. In this workshop, participants will explore how to record and edit macros in Excel, how to make them easi more »
        • Access 2013: Forms
          July 28 9:00am
          This workshop lasts 3.5 hours, and is part of the certificate series Access 2013 End-User Relational forms tie together data from various tables into a single object, facilitating data entry and editing. This workshop is intended for anyone who is interested in learning how to create and enhance vario more »
        • The Office of Equal Opportunity Legal Compliance Training
          July 28 10:00am
          Course Overview:  The Office of Equal Opportunity Legal Compliance Course will provide necessary information to supervisors and HR Professionals in relation to Affirmative Action, Equal Employment Opportunity and the American's with Disabilities Act.  Learning Objectives: - Understand the latest Equal Employment Opportun more »
        Wednesday, July 27, 2016

          About This Event

          Summary

          Yogesh Pandit, Master’s in Bioinformatics Thesis Defense

          Title: Context Specific Text Mining For Annotating Protein Interactions With Experimental Evidence

          Thesis committee:

          • Mathew Palakal, Ph.D., Chair

          • Yunlong Liu, Ph.D.

          • Xiaowen Liu, Ph.D.

          Abstract:

          Proteins are the building blocks in a biological system. They interact with other proteins to make unique biological phenomenon. Protein-protein interactions play a valuable role in understanding the molecular mechanisms occurring in any biological system. Protein interaction databases are a rich source on protein interaction related information. They gather large amounts of information from published literature to enrich their data. Expert curators put in most of these efforts manually. The amount of accessible and publicly available literature is growing very rapidly. Manual annotation is a time consuming process. And with the rate at which available information is growing, it cannot be dealt with only manual curation. There need to be tools to process this huge amounts of data to bring out valuable gist than can help curators proceed faster. In case of extracting protein-protein interaction evidences from literature, just a mere mention of a certain protein by look-up approaches cannot help validate the interaction. Supporting protein interaction information with experimental evidence can help this cause. Also to avoid redundancy in curation efforts and for ease of accessibility, efforts are being put to relate manually curated information to standardized ontologies. In this study, we are applying machine learning based classification techniques to classify any given protein interaction related document into an interaction detection method. We use biological attributes and experimental factors, different combination of which define any particular interaction detection method. Then using predicted detection methods, proteins identified using named entity recognition techniques and decomposing the parts-of-speech composition we search for sentences with experimental evidence for a protein-protein interaction. We report an accuracy of 75.1% with a F-score of 47.6% on a dataset containing 2035 training documents and 300 test documents.

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          Contact Information

          Mary O'Neill
          moneill@iupui.edu

          Event Site --- None ---
          Registration --- None ---

          Event Schedule

          There are no upcoming dates for this event.

          IU Calendar




          • CompTIA CASP
            July 27 9:00am
            This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
          • CompTIA CASP
            July 27 9:00am
            This workshop lasts 5 days. The CompTIA Advanced Security Practitioner (CASP) Certification is a vendor-neutral credential. The CASP exam is an internationally targeted validation of advanced-level security skills and knowledge. While there is no required prerequisite, the CASP certification is intended to more »
          • Excel 2013: Basic Automation Using Macros
            July 27 1:30pm
            This workshop lasts 90 minutes, and is part of the certificate series Excel 2013 End-User Macros enable Excel users to automate their work by recording a sequence of commands into a single action. In this workshop, participants will explore how to record and edit macros in Excel, how to make them easi more »
          • Access 2013: Forms
            July 28 9:00am
            This workshop lasts 3.5 hours, and is part of the certificate series Access 2013 End-User Relational forms tie together data from various tables into a single object, facilitating data entry and editing. This workshop is intended for anyone who is interested in learning how to create and enhance vario more »
          • The Office of Equal Opportunity Legal Compliance Training
            July 28 10:00am
            Course Overview:  The Office of Equal Opportunity Legal Compliance Course will provide necessary information to supervisors and HR Professionals in relation to Affirmative Action, Equal Employment Opportunity and the American's with Disabilities Act.  Learning Objectives: - Understand the latest Equal Employment Opportun more »
          Wednesday, July 27, 2016